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NGS Assay for MRD Detection Gains FDA Approval for 2 Blood Cancers

Jason Harris
Published: Tuesday, Oct 02, 2018

blood cellsThe FDA has approved the next-generation sequencing (NGS) assay clonoSEQ as a test for minimal residual disease (MRD) in patients with acute lymphoblastic leukemia (ALL) or multiple myeloma.

The in vitro diagnostic, which is manufactured by Adaptive Biotechnologies, identifies and quantifies gene sequences in DNA extracted from the bone marrow of patients with ALL or multiple myeloma using multiplex polymerase chain reaction and NGS. The assay detects as few as 1 tumor cell within more than 1 million healthy (<10-6) cells.

“At the FDA, we’re continuing to maximize opportunities for innovation that can improve patient outcomes,” FDA commissioner Scott Gottlieb, MD, said in a press release. “Today’s approval is an important step forward for patients suffering from ALL and multiple myeloma. Determining whether a patient has residual cancer cells remaining after treatment provides information on how well a patient has responded to therapy and how long remission may last. Having a highly sensitive test available to measure minimal residual disease in ALL or multiple myeloma patients can help providers manage their patients’ care.”

The clinical validity of clonoSEQ was demonstrated in a retrospective analysis of samples collected from a clinical trial involving 273 patients with ALL and 2 trials involving 323 and 706 patients with multiple myeloma.

Researchers in the trials used the assay to assess MRD at various disease burden thresholds and determined that MRD status correlated with event-free survival (EFS). EFS was longer and EFS rates were higher for patients assessed as MRD-negative. Findings were similar for progression-free survival (PFS) and disease-free survival among patients with multiple myeloma.

Findings from a study of 56 children with B-cell ALL enrolled in the COG ASCT0431 trial showed that MRD assessment by clonoSEQ better predicted survival and relapse compared with multichannel flow cytometry prior to hematopoietic cell transplantation (P <.0001). Among MRD-negative patients, no patient identified by clonoSEQ relapsed compared with 16% for those detected by flow cytometry (P = .02). Two-year OS also favored NGS, 96% vs 77% (P = .003).1

Data from the Intergroupe Francophone du Myéloma (IFM) 2009 trial published in the New England Journal of Medicine in 2017 showed that clonoSEQ was more accurate than conventional muliparametric flow cytometry, which can detect 1 myeloma cell among 10,000 healthy cells (10-4). Flow cytometry identified 233 patients as MRD-negative, but assessment by clonoSEQ showed that 113 (48%) of those patients were MRD-positive.2

Results from IFM 2009 recently published in Blood demonstrated the importance of MRD in patients with multiple myeloma. Investigators assessed the prognostic value of MRD for PFS and overall survival (OS) in 127 patients who achieved MRD negativity at least once while being treated with the lenalidomide (Revlimid), bortezomib (Velcade), and dexamethasone regimen (RVD).2,3

MRD negativity was defined as the absence of tumor plasma cell within <10-6bone marrow cells. Investigators used clonoSEQ to detect the presence of disease before and after maintenance therapy.

MRD-negative patients had extended PFS both before (P <.001) and after completion (P <.001) of maintenance therapy. Patients who had sustained MRD negativity or who became MRD-negative at the end of maintenance had superior PFS (P <.001) and OS (P = .004). OS was 94% among MRD-negative patients compared with 79% for MRD-positive patients 4 years after the start of maintenance therapy (HR, 0.24; 95% CI, 0.11-0.54; P = .001).

“The IFM 2009 analysis underscores the need for a deeply sensitive, highly accurate and reliable NGS MRD test that can detect and monitor disease burden throughout the treatment continuum,” Charles Sang, senior vice president of diagnostics with Adaptive Biotechnologies, said in a press release. “This study adds to the growing body of evidence that MRD is a critical endpoint that should routinely be incorporated into clinical trials and clinical practice to ensure the best patient outcomes.”

The FDA reviewed clonoSEQ through the de novo premarket review pathway for new types of novel, low-to-moderate-risk devices. The agency also established “special controls” clarifying expectations regarding the efficacy, accuracy, and reliability of tests using MRD to assess changes in disease burden during and after treatment. Along with general controls, these special controls are designed to provide a reasonable promise of efficacy and safety.
 
This approval also creates a new regulatory classification that allows devices of the same type and the same intended use to go through the FDA’s 510(k) process. These devices can gain approval by demonstrating “substantial equivalence” to clonoSEQ.

References

  1. Pulpisher MA, Carlson C, Langholz B, et al. IgH-V(D)J NGS-MRD measurement pre- and early post-allotransplant defines very low- and very high-risk ALL patients. Blood. 2015; 125(22): 3501–3508. doi:  10.1182/blood-2014-12-615757.
  2. A new study published in the journal Blood demonstrates that measuring minimal residual disease negativity using Adaptive Biotechnologies’ next-generation sequencing platform is a major predictive indicator in multiple myeloma [press release]. September 28, 2018. https://www.businesswire.com/news/home/20180928005070/en/New-Study-Published-Journal-Blood-Demonstrates-Measuring. Accessed October 2, 2018.
  3. Perrot A, Lauwers-Cances V, Corre J, et al. Minimal residual disease negativity using deep sequencing is a major prognostic factor in multiple myeloma [published online September 24, 2018]. Blood. doi: 10.1182/blood-2018-06-858613.



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